Difference between revisions of "VolCT - Group 1B"

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(Update links in Round 2 Images and Results to include new TCIA inclusion of results)
 
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** Investigate Intra-observer variability in each task  
 
** Investigate Intra-observer variability in each task  
  
** '''Methods - Materials'''
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**'''Methods - Materials'''
 
*** Image Data from MSK Coffee Break Experiment
 
*** Image Data from MSK Coffee Break Experiment
 
*** 32 NSCLC patients, imaged twice on same scanner over period < 15 minutes
 
*** 32 NSCLC patients, imaged twice on same scanner over period < 15 minutes
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*** Selected one lesion per patient
 
*** Selected one lesion per patient
 
*** no outcome data
 
*** no outcome data
*** Publicly Available on NCIA
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*** Publicly Available on TCIA
  
 
** '''Methods - Readings'''
 
** '''Methods - Readings'''
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* '''Analysis Reports'''
 
* '''Analysis Reports'''
*[[Media:QIBA_Exp1B_CoffeeBreak_Descriptive_Statistics_24Sep10.pdf |Exp 1B Coffee Break Descriptive Statistics - 24Sep2010]]
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*[[Media:QIBA Exp1B CoffeeBreak Descriptive Statistics 24Sep10.pdf|Exp 1B Coffee Break Descriptive Statistics - 24Sep2010]]
*[[Media:QIBA_Exp1B_CoffeeBreak_summary_Table_26Jan11_RECIST_Measureable_or_NOT.pdf‎ |QIBA_Exp1B_Coffee Break Summary Table_26Jan11_RECIST_Measureable_or_NOT]]
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*[[Media:QIBA Exp1B CoffeeBreak summary Table 26Jan11 RECIST Measureable or NOT.pdf|QIBA_Exp1B_Coffee Break Summary Table_26Jan11_RECIST_Measureable_or_NOT]]
*[[Media:QIBA_Exp1B_CoffeeBreak_Descriptive_Statistics_25Mar11_SUBJ_Assess_EZ_Mod_Diff.pdf‎ |Exp 1B Coffee Break Descriptive Statistics - 25Mar2011_Subjective Assessments_EZ_mod_diff]]**
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*[[Media:QIBA Exp1B CoffeeBreak Descriptive Statistics 25Mar11 SUBJ Assess EZ Mod Diff.pdf|Exp 1B Coffee Break Descriptive Statistics - 25Mar2011_Subjective Assessments_EZ_mod_diff]]**
*[[Media:QIBA_Exp1B_CoffeeBreak_summaryTable_minmumDect_18Apr11.pdf‎|QIBA_Exp1B_CoffeeBreak_summaryTable_minimum Detectable Change_ 18Apr2011]]
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*[[Media:QIBA Exp1B CoffeeBreak summaryTable minmumDect 18Apr11.pdf|QIBA_Exp1B_CoffeeBreak_summaryTable_minimum Detectable Change_ 18Apr2011]]
  
 
* '''Methods Related Documents'''
 
* '''Methods Related Documents'''
*[[Media:QIBA_Exp1B_CoffeeBreak_lesion_UCLA_detailsv3-2.xls‎‎‎|QIBA_Exp1b_Coffee_Break_List of lesions with coordinates and pictures]]
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*[[Media:QIBA Exp1B CoffeeBreak lesion UCLA detailsv3-2.xls|QIBA_Exp1b_Coffee_Break_List of lesions with coordinates and pictures]]
 
*[[Media:Naming Convention QIBA 1B Experiment 2 26Aug09.xls|Naming Convention for the QIBA Group 1B Experiment and randomization scheme]]
 
*[[Media:Naming Convention QIBA 1B Experiment 2 26Aug09.xls|Naming Convention for the QIBA Group 1B Experiment and randomization scheme]]
  
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*[[Media:ACRIN 6678 QC Parmeters for CT Scan Measurements.pdf|ACRIN 6678 Quality Control Parameters for CT Scan Tumor Volumetric Measurements]]
 
*[[Media:ACRIN 6678 QC Parmeters for CT Scan Measurements.pdf|ACRIN 6678 Quality Control Parameters for CT Scan Tumor Volumetric Measurements]]
  
* [http://www.virtualscopics.com/pdf/ConferencePapers/Ashton_Manchester.pdf Conference Paper] on Reproducibility and Accuracy of Uni- and Bi-Dimensional Tumor Measurements from MRI and CT Volumes, which looks at RECIST, WHO and Volume measurements.
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* [https://web.archive.org/web/20110206162336/http://www.virtualscopics.com/pdf/ConferencePapers/Ashton_Manchester.pdf Conference Poster] on Reproducibility and Accuracy of Uni- and Bi-Dimensional Tumor Measurements from MRI and CT Volumes, which looks at RECIST, WHO and Volume measurements.
 +
 
 +
* '''Final Report'''
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*[http://dx.doi.org/10.1016/j.tranon.2015.01.001 McNitt-Gray et al. Determining the Variability of Lesion Size Measurements from CT Patient Data Sets Acquired under “No Change” Conditions]
  
 
==Downloadable Images and [[:Category:Datasets|Data Sets]]==
 
==Downloadable Images and [[:Category:Datasets|Data Sets]]==
 
===Round 2 Images and Results===
 
===Round 2 Images and Results===
*TCIA RIDER Lung CT Images - [https://wiki.cancerimagingarchive.net/display/Public/RIDER+Collections Collection Description] - [https://public.cancerimagingarchive.net/ncia/home.jsf Login, Search, Download] - (MSKCC Coffee Break) - Used as No Change Cases ''link posted 12.29.2012''
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*[https://www.cancerimagingarchive.net/ TCIA] - [https://wiki.cancerimagingarchive.net/display/Public/RIDER+Collections RIDER] [https://wiki.cancerimagingarchive.net/display/Public/RIDER+Lung+CT Lung CT Images] - (MSKCC Coffee Break) - Used as No Change Cases ''link posted 12.29.2012 updated 05.24.2023''
*NBIA RIDER Pilot CT Images - [https://wiki.nci.nih.gov/display/CIP/RIDER Collection Description] - [https://imaging.nci.nih.gov/ncia/home.jsf Login, Search, Download] - Used as With Change Distractors ''link posted 12.29.2012''
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*[https://www.cancerimagingarchive.net/ TCIA] (formerly at [https://wiki.nci.nih.gov/display/NBIA/NBIA+CBIIT+Instance+Retirement+Notice NBIA]) - [https://wiki.cancerimagingarchive.net/display/Public/RIDER+Collections RIDER] [https://wiki.cancerimagingarchive.net/display/Public/RIDER+Pilot Pilot CT Images] - Used as With Change Distractors ''link posted 12.29.2012 updated 05.24.2023''
*[http://www.dclunie.com/data/QIBA_CT_1BR2_DICOM_results_20121229.tar.bz2 DICOM Result Files (SR,SEG,PR)] ''posted 12.29.2012''
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*[http://www.dclunie.com/data/QIBA_CT_1BR2_DICOM_results_20121229.tar.bz2 DICOM Result Files (SR,SEG,PR)] ''posted 12.29.2012'' - now also at [https://www.cancerimagingarchive.net/ TCIA] [https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=70228818 QIBA VolCT Group 1B Round 2 No Change Size Measurements (QIBA-VolCT-1B)] ''posted 05.24.2023''
*[[Media:NOTES.TCIA.QIBA_CT_1BR2.release.doc| Release notes describing collection contents]] ''posted 12.29.2012''
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*[[Media:NOTES.TCIA.QIBA CT 1BR2.release.doc| Release notes describing collection contents]] ''posted 12.29.2012''
*[[Media:ClinicalTrialResults_20121229_QIBA.doc‎| Description of SR encoding template]] ''posted 12.29.2012''
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*[[Media:ClinicalTrialResults 20121229 QIBA.doc| Description of SR encoding template]] ''posted 12.29.2012''
  
*[[Media:UCLA_CoffeeBreak_lesion_detailsv3-2_May_2011.xls|Excel File describing "No Change" cases (filenames, slice location, x,y coordinates, etc.)]]
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*[[Media:UCLA CoffeeBreak lesion detailsv3-2 May 2011.xls|Excel File describing "No Change" cases (filenames, slice location, x,y coordinates, etc.)]]
*[[Media:QIBA_1B_clinical_workflow_change_lesions_v2.xls|Excel File describing "Change" cases (filenames, slice location, x,y coordinates, etc.)]]
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*[[Media:QIBA 1B clinical workflow change lesions v2.xls|Excel File describing "Change" cases (filenames, slice location, x,y coordinates, etc.)]]
*[[Media:actualResults_allreaders_20120826.xls|Tabulated reader results]] ''version 08.12.2012'' ''posted 02.05.2013''
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*[[Media:ActualResults allreaders 20120826.xls|Tabulated reader results]] ''version 08.12.2012'' ''posted 02.05.2013''
  
 
===Round 1 Images and Results===
 
===Round 1 Images and Results===
*[[Media:actualResults_tabulated_20100804.xls|Tabulated reader results]] ''version 08.04.2010'' ''posted 02.05.2013''
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*[[Media:ActualResults tabulated 20100804.xls|Tabulated reader results]] ''version 08.04.2010'' ''posted 02.05.2013''

Latest revision as of 10:53, 24 May 2023

Current Goals & Status:

Question: What is the minimum detectable level of change in patient datasets under a “No Change” condition?

    • AIMS: For patient datasets acquired over a very short time interval (“no change” condition”) investigate variance in measuring change in volume, diameter and bi-directional diameters of lesions
    • Investigate inter-observer variability in each task
    • Investigate Intra-observer variability in each task
    • Methods - Materials
      • Image Data from MSK Coffee Break Experiment
      • 32 NSCLC patients, imaged twice on same scanner over period < 15 minutes
      • Thin slice (1.25 mm thick) image data
      • Selected one lesion per patient
      • no outcome data
      • Publicly Available on TCIA
    • Methods - Readings
      • 5 readers
      • Read CT at timepoint 1, CT at timepoint 2 and repeat either CT timepoint 1 or timeoint 2 to assess intra-reader variability
    • Methods - Measurements
      • Measure Single Longest Diameter, manually (SLD)
      • Measure Longest Diameter and Perpendicular Diameter; take product to obtain Product of Diameters (POD)
      • Contour Full Boundary of lesion with semiautomated tool; calculate volume (Vol)
      • Extract other measures as well (SLD from POD measureement; SLD from VOl and POD from Vol).
    • The Order of Readers, Lesions and Measurement Methods were Randomized (Measurements done in Blocks of 10)
    • Analyses
      • Pooled Analysis across readers and lesions; Percent Difference between Scan 1 and Scan 2 for each measurement method
      • Subgroup Analyses: (a) Based on Measureable/Non-Measureable lesions identified by Mike O'Neal of CoreLabs; (b) Difficult, Moderate and Easy as Identified by Mike McNitt-Gray
  • Conference Poster on Reproducibility and Accuracy of Uni- and Bi-Dimensional Tumor Measurements from MRI and CT Volumes, which looks at RECIST, WHO and Volume measurements.

Downloadable Images and Data Sets

Round 2 Images and Results

Round 1 Images and Results