Difference between revisions of "Ultrasound SWS Biomarker Ctte"
Jump to navigation
Jump to search
| (121 intermediate revisions by 4 users not shown) | |||
| Line 1: | Line 1: | ||
| − | :Co-chairs: | + | {{TOCright}} |
| − | : | + | :Co-chairs: David Fetzer, MD; Stephen McAleavey, PhD; Stephen Rosenzweig, PhD |
| − | + | :RSNA Staff Support: Julie Lisiecki | |
| + | * [http://tinyurl.com/QIBA-US-SWS-Roster Roster] | ||
==Project Snapshot - Shear Wave Speed (SWS)== | ==Project Snapshot - Shear Wave Speed (SWS)== | ||
An Ultrasound Quantitative Biomarker Planning Meeting was held on Thursday, March 29, 2012 at the 2012 American Institute of Ultrasound in Medicine (AIUM) Annual Convention, in Phoenix, AZ. | An Ultrasound Quantitative Biomarker Planning Meeting was held on Thursday, March 29, 2012 at the 2012 American Institute of Ultrasound in Medicine (AIUM) Annual Convention, in Phoenix, AZ. | ||
| − | + | T | |
| + | he purpose of this meeting was to plan an effort by the biomedical ultrasound community to create and support implementation of a QIBA Profile for a quantitative biomarker in ultrasound imaging. Shear Wave Speed was selected as the qualifying biomarker at this meeting. | ||
| + | |||
| + | Public Comment for Version 1.0 of the Profile, QIBA US Measurement of Shear Wave Speed for Estimation of Liver Fibrosis, closed December 18, 2019. | ||
==Profile Development== | ==Profile Development== | ||
| + | Status - Consensus voting in progress - updates to Profile have been made since public comment | ||
| + | |||
| + | See Profiles page for copy of the Profile: http://qibawiki.rsna.org/index.php/Profiles | ||
| + | |||
| + | '''Profile versions''': | ||
| + | |||
| + | *[[Media:QIBA_US_SWS_Profile_03.19.2021-clean version.pdf|US Shear Wave Speed for Liver Fibrosis 2021-03-19]] (clean version - Consensus vote) | ||
| + | *[[Media:QIBA_US_SWS_Profile_03.19.2021-with edits.pdf|US Shear Wave Speed for Liver Fibrosis 2021-03-19]] (version with edits for Consensus vote) | ||
| + | |||
| + | :*[[Media:SWS Checklists-Appendix E-03.19.2021.xlsx|Appendix E: SWS Checklists]] (updated March 19, 2021) | ||
| + | |||
| + | |||
| + | '''January 2021 revisions''': | ||
| + | *[[Media:QIBA_US_SWS_Profile_01.29.2021.pdf|US Shear Wave Speed for Liver Fibrosis 2021-01-29 - revisions complete]] | ||
| + | *[[Media:QIBA_US_SWS_Profile_01.29.2021-IP.pdf|US Shear Wave Speed for Liver Fibrosis 2021-01-29 - revisions in progress]] | ||
| + | |||
| + | |||
| + | '''Public Comment:''' | ||
| + | *[[Media:QIBA_US_SWS_Profile_10.21.19.pdf|US Shear Wave Speed for Liver Fibrosis 2019-10-21]] ('''closed''' on December 18, 2019) | ||
| − | *[[Media: | + | :*[[Media:SWS Checklists-Appendix E.xlsx|Appendix E: SWS Checklists, 2019-10-21]] ('''closed''' on December 18, 2019) |
| + | '''''[[Working Documents Archive]]''''' | ||
| − | == | + | ==SWS Task Forces== |
:* [[Combined: System Dependencies & Phantom Development Subcommittees]] | :* [[Combined: System Dependencies & Phantom Development Subcommittees]] | ||
:* [[Clinical Applications and Biological Targets Subcommittee]] | :* [[Clinical Applications and Biological Targets Subcommittee]] | ||
| Line 19: | Line 43: | ||
:* [[SWS Reporting and Results Transmission Subcommittee (no charge yet provided)]] | :* [[SWS Reporting and Results Transmission Subcommittee (no charge yet provided)]] | ||
| − | ==Meetings | + | ==Recent US-SWS Meetings== |
| − | + | '''Approved call summaries:''' | |
| − | |||
| − | *[[Media: | + | *[[Media:08 18 2021 QIBA US SWS BC Call Summary-FINAL-DF.pdf | August 18, 2021]] |
| − | *[[Media: | + | *[[Media:07 21 2021 QIBA US SWS BC Call Summary-FINAL.pdf | July 21, 2021]] |
| − | *[[Media:01 22 | + | *[[Media:05 19 2021 QIBA US SWS BC Call Summary-FINAL-2.pdf | May 19, 2021]] |
| + | *[[Media:03 19 2021 QIBA US SWS BC Call Summary-FINAL-2.pdf | March 19, 2021]] | ||
| + | *[[Media:01 22 2021 QIBA US SWS BC Call Summary-FINAL.pdf | January 22, 2021]] | ||
| − | + | *[[Media:11 20 2020 QIBA US SWS BC Call Summary-FINAL.pdf | November 20, 2020]] | |
| − | *[[QIBA | + | *[[Media:09 11 2020 QIBA US SWS BC Call Summary-FINAL.pdf | September 11, 2020]] |
| + | *[[Media:06 05 2020 QIBA US SWS BC Call Summary-FINAL.pdf | June 5, 2020]] | ||
| + | *[[Media:02 07 2020 QIBA US SWS BC Call Summary-FINAL.pdf | February 7, 2020]] | ||
| − | |||
| − | |||
| − | |||
| + | '''''[[US SWS Call Summaries Archive]]''''' | ||
| − | == | + | ==Conferences== |
| − | + | ||
| + | *[[Media:List of 2020 Imaging-Related conferences(updated 02-14-2020).pdf|2020 Imaging-Related Conferences with links]] | ||
==<font color=green>'''Tools'''</font>== | ==<font color=green>'''Tools'''</font>== | ||
| Line 45: | Line 71: | ||
public group that anyone can join. If you would like a specific invitation to join, please email Dr. Palmeri.'' | public group that anyone can join. If you would like a specific invitation to join, please email Dr. Palmeri.'' | ||
| − | *QIBA Elastic CIRS Phantom Simulation Data -> - [ https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms ] - <font color=green>New data has been uploaded to the QIDW</font> { | + | *QIBA Elastic CIRS Phantom Simulation Data -> - [ https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms ] or https://zenodo.org/record/3497594 |
| + | - <font color=green>New data has been uploaded to the QIDW</font> { https://qidw.rsna.org/ } | ||
*QIBA Finite Element Tool Repository Online & Elastic / VE Simulation Data - [ https://github.com/orgs/RSNA-QIBA-US-SWS/dashboard ] | *QIBA Finite Element Tool Repository Online & Elastic / VE Simulation Data - [ https://github.com/orgs/RSNA-QIBA-US-SWS/dashboard ] | ||
| Line 51: | Line 78: | ||
*Web browsers recommended: ''Firefox'' ''or'' ''Google Chrome'' | *Web browsers recommended: ''Firefox'' ''or'' ''Google Chrome'' | ||
| − | == | + | ==US Phantoms== |
| + | *Exploratory QIBA Elastic and Viscoelastic homogeneous SWS calibration liver phantoms, CIRS model 039 and prototype. | ||
| + | *Exploratory Volume Flow Doppler Phantom with nonparabolic flow - Sun Nuclear prototype. | ||
| + | *Research flow phantom for contrast ultrasound testing, M. Averkiou, Univ. of Wash. | ||
| + | |||
| + | Phantom Simulation Data -> http://www.rsna.org/qidw/ | ||
| + | https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms | ||
| + | |||
| + | QIBA Finite Element Tool Repository Online & Elastic / Viscoelastic Simulation Data - [https://github.com/orgs/RSNA-QIBA-US-SWS/dashboard] | ||
| + | |||
| + | ==Digital Phantoms== | ||
| + | ''See ultrasound digital phantoms'': | ||
| + | *Permanent source code for digital phantoms: https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms(https://zenodo.org/badge/latestdoi/31222567) | ||
| + | |||
| + | *Permanent digital phantom data: https://doi.org/10.7924/r4sj1f98c (this is associated with the code above) | ||
| + | |||
| + | ==Software== | ||
| + | ''See reference imaging system software:'' | ||
| + | *Verasonics scanner sequences and processing code: https://github.com/RSNA-QIBA-US-SWS/VerasonicsPhantomSequences | ||
| + | |||
| + | *Test Verasonics data for post-processing output: https://doi.org/10.7924/r4df6q75s | ||
==Reference Materials== | ==Reference Materials== | ||
| Line 57: | Line 104: | ||
'''Article citations:''' | '''Article citations:''' | ||
* Sebastiani G, Alberti A. How far is noninvasive assessment of liver fibrosis from replacing liver biopsy in Hepatitis C? ''Journal of Viral Hepatitis,''2012, 19 (Suppl. 1), 18–32. [http://www.http://www.ncbi.nlm.nih.gov/pubmed?term=Sebastiani%20G%2C%20Alberti%20A.%20%20How%20far%20is%20noninvasive%20assessment%20of%20liver%20fibrosis%20from%20%20replacing%20liver%20biopsy%20in%20Hepatitis%20C%3F%20%20Journal%20of%20Viral%20Hepatitis%2C%202012%2C%2019%20(Suppl.%201)%2C%2018%E2%80%9332. PubMed citation] | * Sebastiani G, Alberti A. How far is noninvasive assessment of liver fibrosis from replacing liver biopsy in Hepatitis C? ''Journal of Viral Hepatitis,''2012, 19 (Suppl. 1), 18–32. [http://www.http://www.ncbi.nlm.nih.gov/pubmed?term=Sebastiani%20G%2C%20Alberti%20A.%20%20How%20far%20is%20noninvasive%20assessment%20of%20liver%20fibrosis%20from%20%20replacing%20liver%20biopsy%20in%20Hepatitis%20C%3F%20%20Journal%20of%20Viral%20Hepatitis%2C%202012%2C%2019%20(Suppl.%201)%2C%2018%E2%80%9332. PubMed citation] | ||
| − | |||
'''Funded-Project Reports:''' | '''Funded-Project Reports:''' | ||
*[[Media:FINAL REPORT-DrSamir-QIBA Round 3 Project (2013-2014) Report.pdf|FINAL REPORT-Dr. Samir - QIBA Round 3 Project (2013-2014)- posted on 3/31/2015 for Dr. Samir (Massachusetts General Hospital / Harvard )]] | *[[Media:FINAL REPORT-DrSamir-QIBA Round 3 Project (2013-2014) Report.pdf|FINAL REPORT-Dr. Samir - QIBA Round 3 Project (2013-2014)- posted on 3/31/2015 for Dr. Samir (Massachusetts General Hospital / Harvard )]] | ||
| − | |||
'''Presentations and Reports:''' | '''Presentations and Reports:''' | ||
| + | *[[Media:ITEC 2016 Clinical Workflow (10.21.2016).pdf | 2016 ITEC: RSNA-QIBA SWS Profile – What the Clinical Workflow Would look like and a Review of Biological Confounders]] ''Manish Dhyani, MD'' | ||
| + | *[[Media:ITEC 2016 Profile (10.21.2016).pdf | 2016 ITEC: The RSNA-QIBA SWS Profile: Current Status,Methods in Generating the Profile and a Discussion of Currently Open and Closed Issues]] ''Manish Dhyani, MD'' | ||
| + | *[[Media:ITEC 2016 FDA (10.21.2016).pdf | 2016 ITEC: QIBA SWS Profile Effects: Clinical, Research, Regulatory]] ''Brian Garra, MD'' | ||
| + | *[[Media:ITEC 2016 phantoms(10.21.2016).pdf | 2016 ITEC: RSNA-QIBA Comparison of Shear Wave Speed Estimation in Viscoelastic Phantoms]] ''Tim Hall, PhD'' | ||
| + | *[[Media:ITEC 2016 QIBA US Overview(10.21.2016).pdf | 2016 ITEC: Overview of QIBA Ultrasound Activity]] ''Tim Hall, PhD'' | ||
*[[Media:Poster_IEEE2015_QIBA_(11.06.2015).pdf|2015 IEEE International Ultrasonics Symposium Poster: RSNA /QIBA Ultrasound Shear Wave Speed Phase II Phantom Study in Viscoelastic Media]] | *[[Media:Poster_IEEE2015_QIBA_(11.06.2015).pdf|2015 IEEE International Ultrasonics Symposium Poster: RSNA /QIBA Ultrasound Shear Wave Speed Phase II Phantom Study in Viscoelastic Media]] | ||
*[[Media:CIRS E2250 Phantom Measurements.pdf|CIRS E2250 Phantom Measurements- presented on 7/11/2014 by Dr. Mark Palmeri (Duke University)]] | *[[Media:CIRS E2250 Phantom Measurements.pdf|CIRS E2250 Phantom Measurements- presented on 7/11/2014 by Dr. Mark Palmeri (Duke University)]] | ||
| Line 86: | Line 136: | ||
*[[Media: QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rognin.pdf|QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rognin Presentation]] | *[[Media: QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rognin.pdf|QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rognin Presentation]] | ||
*[[Media: QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rubin.pdf|QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rubin Presentation]] | *[[Media: QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rubin.pdf|QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rubin Presentation]] | ||
| + | |||
| + | ==QIBA Funded Projects== | ||
| + | |||
| + | ====Round 3==== | ||
| + | *[[Media:Phase 2 Phantom Study with Inelastic, SWS-Dispersive Media.pdf | Project (D) Phase 2 Phantom Study with Inelastic, SWS-Dispersive Media (University of Wisconsin - Madison)]] | ||
| + | |||
| + | *[[Media:A Pilot Study of the Effect of Steatosis and Inflammation on Shear Wave Speed for the Estimation of Liver Fibrosis Stage in Patients with Diffuse Liver Disease.pdf | Project (I) A Pilot Study of the Effect of Steatosis and Inflammation on Shear Wave Speed for the Estimation of Liver Fibrosis Stage in Patients with Diffuse Liver Disease (Massachusetts General Hospital)]] | ||
| + | |||
| + | *[[Media:Numerical Simulation of Shear Wave Speed Measurements in the Liver.pdf | Project (K) Numerical Simulation of Shear Wave Speed Measurements in the Liver (Duke University)]] | ||
| + | |||
| + | ====Round 4==== | ||
| + | *[[Media:Beyond Confounders-Addressing Sources of Measurement Variability and Error in Shear Wave Elastography.pdf | Project (W) Beyond Confounders-Addressing Sources of Measurement Variability and Error in Shear Wave Elastography (Massachusetts General Hospital)]] | ||
| + | |||
| + | *[[Media:Development and Validation of Simulations and Phantoms Mimicking the Viscoelastic Properties of Human Liver.pdf | Project (Z) Development and Validation of Simulations and Phantoms Mimicking the Viscoelastic Properties of Human Liver (Duke University)]] | ||
| + | |||
| + | ====Round 5==== | ||
| + | *[[Media:Analysis of Sources of US SWS Measurement Inter-System Variability.pdf | Project (F) Analysis of Sources of US SWS Measurement Inter-System Variability (Duke University)]] | ||
Revision as of 14:52, 24 August 2021
- Co-chairs: David Fetzer, MD; Stephen McAleavey, PhD; Stephen Rosenzweig, PhD
- RSNA Staff Support: Julie Lisiecki
Project Snapshot - Shear Wave Speed (SWS)
An Ultrasound Quantitative Biomarker Planning Meeting was held on Thursday, March 29, 2012 at the 2012 American Institute of Ultrasound in Medicine (AIUM) Annual Convention, in Phoenix, AZ. T he purpose of this meeting was to plan an effort by the biomedical ultrasound community to create and support implementation of a QIBA Profile for a quantitative biomarker in ultrasound imaging. Shear Wave Speed was selected as the qualifying biomarker at this meeting.
Public Comment for Version 1.0 of the Profile, QIBA US Measurement of Shear Wave Speed for Estimation of Liver Fibrosis, closed December 18, 2019.
Profile Development
Status - Consensus voting in progress - updates to Profile have been made since public comment
See Profiles page for copy of the Profile: http://qibawiki.rsna.org/index.php/Profiles
Profile versions:
- US Shear Wave Speed for Liver Fibrosis 2021-03-19 (clean version - Consensus vote)
- US Shear Wave Speed for Liver Fibrosis 2021-03-19 (version with edits for Consensus vote)
- Appendix E: SWS Checklists (updated March 19, 2021)
January 2021 revisions:
- US Shear Wave Speed for Liver Fibrosis 2021-01-29 - revisions complete
- US Shear Wave Speed for Liver Fibrosis 2021-01-29 - revisions in progress
Public Comment:
- US Shear Wave Speed for Liver Fibrosis 2019-10-21 (closed on December 18, 2019)
- Appendix E: SWS Checklists, 2019-10-21 (closed on December 18, 2019)
SWS Task Forces
Recent US-SWS Meetings
Approved call summaries:
Conferences
Tools
- QIBA Mendeley Group -> Literature Database - | QIBA Mendeley Group
Literature for this the QIBA SWS Biomarker Committee has been compiled using Mendeley, and is called 'QIBA SWS'. This is a public group that anyone can join. If you would like a specific invitation to join, please email Dr. Palmeri.
- QIBA Elastic CIRS Phantom Simulation Data -> - [ https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms ] or https://zenodo.org/record/3497594
- New data has been uploaded to the QIDW { https://qidw.rsna.org/ }
- QIBA Finite Element Tool Repository Online & Elastic / VE Simulation Data - [ https://github.com/orgs/RSNA-QIBA-US-SWS/dashboard ]
- Web browsers recommended: Firefox or Google Chrome
US Phantoms
- Exploratory QIBA Elastic and Viscoelastic homogeneous SWS calibration liver phantoms, CIRS model 039 and prototype.
- Exploratory Volume Flow Doppler Phantom with nonparabolic flow - Sun Nuclear prototype.
- Research flow phantom for contrast ultrasound testing, M. Averkiou, Univ. of Wash.
Phantom Simulation Data -> http://www.rsna.org/qidw/ https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms
QIBA Finite Element Tool Repository Online & Elastic / Viscoelastic Simulation Data - [1]
Digital Phantoms
See ultrasound digital phantoms:
- Permanent source code for digital phantoms: https://github.com/RSNA-QIBA-US-SWS/QIBA-DigitalPhantoms(https://zenodo.org/badge/latestdoi/31222567)
- Permanent digital phantom data: https://doi.org/10.7924/r4sj1f98c (this is associated with the code above)
Software
See reference imaging system software:
- Verasonics scanner sequences and processing code: https://github.com/RSNA-QIBA-US-SWS/VerasonicsPhantomSequences
- Test Verasonics data for post-processing output: https://doi.org/10.7924/r4df6q75s
Reference Materials
Article citations:
- Sebastiani G, Alberti A. How far is noninvasive assessment of liver fibrosis from replacing liver biopsy in Hepatitis C? Journal of Viral Hepatitis,2012, 19 (Suppl. 1), 18–32. PubMed citation
Funded-Project Reports:
Presentations and Reports:
- 2016 ITEC: RSNA-QIBA SWS Profile – What the Clinical Workflow Would look like and a Review of Biological Confounders Manish Dhyani, MD
- 2016 ITEC: The RSNA-QIBA SWS Profile: Current Status,Methods in Generating the Profile and a Discussion of Currently Open and Closed Issues Manish Dhyani, MD
- 2016 ITEC: QIBA SWS Profile Effects: Clinical, Research, Regulatory Brian Garra, MD
- 2016 ITEC: RSNA-QIBA Comparison of Shear Wave Speed Estimation in Viscoelastic Phantoms Tim Hall, PhD
- 2016 ITEC: Overview of QIBA Ultrasound Activity Tim Hall, PhD
- 2015 IEEE International Ultrasonics Symposium Poster: RSNA /QIBA Ultrasound Shear Wave Speed Phase II Phantom Study in Viscoelastic Media
- CIRS E2250 Phantom Measurements- presented on 7/11/2014 by Dr. Mark Palmeri (Duke University)
- Comparison of Viscoelastic Properties of CIRS Phantoms and the Human Liver - presented on 3/21/2014 by Dr. Ned Rouze (Duke University)
- Viscous Phantom Study update presented on 2/21/2014 by Dr. Hua Xie (Philips)
- presented 1/10/2014 by Dr. Nightingale: Preliminary Results –CIRS VE phantom analysis
- 2013 IEEE/UFFC Joint Symposium paper proceedings: RSNA/QIBA: Shear Wave Speed as a Biomarker for Liver Fibrosis Staging
- 2013 IEEE/UFFC Joint Symposium: RSNA/QIBA US SWS Technical Committee Poster: Shear Wave Speed as a Biomarker for Liver Fibrosis Staging
- 2012 QIBA Annual Meeting Presentation: QIBA US SHEAR WAVE SPEED Clinical Applications Committee Report
- 2012 QIBA Annual Meeting Presentation: US Modality Committee Report
- 2012 AIUM Presentation:QIBA-Blood Flow Measurement in the Hemodialysis Patient M.L. Robbin, MD
- 2012 AIUM Presentation: Novel Pushes Make Complex Shear Waves for Elasticity Imaging J. Greenleaf, PhD
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Agenda
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Sullivan Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Carson Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Cosgrove Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Garra Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Hall Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Hoyt Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Nelson Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rognin Presentation
- QIBA Ultrasound Biomarkers Meeting, 03.29.2012-Dr. Rubin Presentation